Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs140902451 chr13:114160403 G/GTCA 4.56E-12 177 24.23 29.95 3.32 KM Plot
PCPG rs140961092 chr7:105149500 A/G 5.04E-5 178 20.17 28.95 2.28 KM Plot
PCPG rs141094380 chr20:10634658 CA/C 0.000208 172 24.37 34.83 14.28 KM Plot
PCPG rs141136248 chr16:89948948 A/AAG 0.000157 176 25.77 21.5 36.37 KM Plot
PCPG rs141155165 chr5:50607395 T/TA 7.57E-5 174 25.28 24.62 31.35 KM Plot
PCPG rs141269638 chr11:18145067 G/A 3.28E-5 177 27.23 24.1 6.7 KM Plot
PCPG rs141303458 chr12:56698203 T/TC 1.01E-7 177 25.35 29.13 0.8 KM Plot
PCPG rs141321217 chr3:115555528 G/GAGATGT 1.09E-5 176 25.2 26.37 13.75 KM Plot
PCPG rs141332785 chr2:118685214 T/C 1.6E-5 178 25.17 30.93 11.65 KM Plot
PCPG rs141347987 chr16:71708483 C/CA 8.79E-6 175 24.23 31.48 14.5 KM Plot
PCPG rs141382461 chr22:25621485 CA/C 0.00017 175 25.28 28.3 60.48 KM Plot
PCPG rs141443747 chr16:89581343 CTT/C 0.000292 176 27.6 25.28 19.87 KM Plot
PCPG rs141652077 chr13:28241136 GCTCC/G 5.38E-6 178 25.17 26.57 11.78 KM Plot
PCPG rs141671420 chr8:121489334 G/A 4.28E-6 177 27.23 25.33 19.87 KM Plot
PCPG rs141707414 chr17:1410184 CT/C 1.46E-5 174 25.05 25 25.17 KM Plot